Scientists Trace Potato Origins to Ancient Andes Hybrid 9 Million Years Ago

The humble potato, the backbone of countless dishes from crisps to mashed potatoes, owes its existence to a remarkable event that took place nine million years ago in the foothills of the Andes, researchers have found. A groundbreaking study has revealed that the origins of the potato can be traced back to a hybridisation event between two distant plant relatives, providing new insights into the evolution of one of the world’s most important crops.

The study, led by Dr. Sanwen Huang from the Chinese Academy of Agricultural Sciences, shows that the ancestors of today’s potato species likely emerged when the ancestors of tomatoes interbred with a group of plants known as Etuberosum. This hybridisation event set the stage for the evolution of the potato’s unique ability to form underground tubers, which allowed the plant to rapidly diversify and eventually evolve into the more than 100 species we know today.

Dr. Sanwen Huang, Lead Researcher and Professor at the Chinese Academy of Agricultural Sciences:

"⁠Our findings show how a hybridization event between species can spark the evolution of new traits, allowing even more species to emerge."

"We’ve finally solved the mystery of where potatoes came from."

The paper describing the hybridisation event has been published in the journal Cell.

Domestic potatoes are incredibly diverse, but it takes a really long time to breed new varieties due to their unusual genetics.

The wild diversity of potatoes

Potatoes are one of the world’s most important crops. Along with wheat, maize and rice, they are estimated to account for up to 80% of all calories eaten by people worldwide. 

But the simple spud you can pick up in the supermarket is just one species of a highly diverse group of plants. There are around 140 species of wild potato in South America, growing from Mexico in the north all the way down to Argentina and Chile in the south.

As the climate changes and our understanding of genetic diversity and resilience in crops has increased, scientists are trying to figure out ways to bring some of that wild diversity into our domestic species. But potatoes are notoriously difficult to do this with.

This is because the genetics of potatoes is unusual. While most species, including us, have two copies of chromosome in each cell, the potato has four. This is a state known as tetraploidy and it means that thousands of varieties of potato have to be bred to have the chance of creating one that is useful. The result is that it can take decades to create a new type of the vegetable.

There has long been uncertainty about whether potatoes are more closely related to tomatoes or Etuberosum. It turns out they're both equally related.

Dr. Sandy Knapp, Senior Researcher and Plant Taxonomist at the Natural History Museum: 

"⁠One of the powers of plant breeding is to get some of that genetic variability back without compromising the traits that we want like high yields, good nutrition and low toxicity."

"A confounding factor in all of this is that potatoes are quite easy to reproduce vegetatively. This means there’s not been the impetus or ability to do traditional plant breeding in the same way with potatoes that there has been with other plants like tomatoes."

This means that many countries are continuing to use varieties of potatoes that have remained basically unchanged for decades. This is a concern as our climate rapidly changes.

To try and solve this issue, researchers turned to the potato’s past. 

In the foothills of the Andes

Despite the importance of potatoes to our nutrition and culture, its origin has been surprisingly murky. We know that the species we cultivate, the common potato Solanum tuberosum, originated in South America. This is based on evidence of domestication of the potato by societies on the shores of Lake Titicaca as early as 7,000 years ago, coupled with the fact that the diversity of wild species is highest in the Andes.

But exactly how this group of plants first came into existence has been a mystery. The morphology of the plant looks strikingly similar to that of three closely related potato-like species from Chile known collectively as Etuberosum. Yet there are other aspects which appear to show that the tomato is closest.

The Andes was rising at around the same time that the hybridisation event occured, providing new environments for the plants.

Sandy was able to combine her expertise in Solanum taxonomy with the genetic skills of Sanwen and his team to delve deep into the potatoes genetics. They uncovered that the potato genome is actually a mosaic of different elements that come from the tomato and the Etuberosum genomes. This showed that the original potato lineage must have been the result of a hybridisation event between ancestors of the two groups.

What is more, they were able to pinpoint exact genes from each parent group which were responsible for the growth of underground tubers. For example, the gene SP6A which acts like a master switch to turn on or off tuber growth comes from tomatoes. The gene IT1 which controls the growth of underground stems from which the tubers grow, however, comes from Etuberosum. Potatoes – the tubers we eat - wouldn’t be able to form without either of these genes.

By figuring out that this hybridisation event occurred roughly nine million years ago, they were also able to offer up a suggestion as to why the potato lineage was then able to rapidly diversify. At about this period in time, the Andes mountains were rising ever higher. This was creating new environments that were perfect for the newly evolved potato plants.

Dr. Sandy Knapp:

"It was a concatenation of events. The ability to vegetatively reproduce perhaps led to stability of these hybrid populations for long enough for them to develop ways to sexually reproduce. But it also allowed them to invade lots of different habitats, including the dry cold habitats which were being formed in the high Andes."

Had these events not aligned, the beloved chip might never have made it to our plates.